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obelisk/CONTEXT.md
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tommy0103andClaude Opus 4.8 e3e61cc7ab fix: coordinate sqlite index writers
Implement the full ADR-0006 plan: three-layer separation of transaction
correctness, retry policy, and cross-process writer coordination.

Layer 1 — scripts/tx.ts (transaction correctness):
- runWriteTransaction executes work exactly once; no internal retry.
- BEGIN IMMEDIATE takes the write lock up front (avoids SQLITE_BUSY_SNAPSHOT).
- Guarded rollback: checks inTransaction() via adapter before attempting
  ROLLBACK; never masks the primary exception.
- WriteTxDiagnostics attached to errors: phase, code, label,
  rollbackSucceeded, rollbackError, transactionActive.
- Binding adapters (betterSqliteTransactionAdapter, nodeSqliteTransactionAdapter)
  mapping better-sqlite3's `.inTransaction` and node:sqlite's `.isTransaction`.
- configureConnection centralizes WAL + synchronous + busy_timeout.

Layer 2 — scripts/write-coordinator.ts (retry policy):
- runRetryableWriteTransaction: bounded retry with total time budget.
- Only retries when the transaction confirmed ended (transactionActive=false)
  and the error is SQLITE_BUSY during work/commit phase.
- BEGIN-phase BUSY = abort entire build (isBeginBusyFailure); the caller
  returns `{ deferred: true, reason: 'writer_busy' }` instead of waiting.
- hasUnusableTransaction detects a still-active transaction after failure;
  aborts the build immediately, never retries.

Layer 3 — scripts/writer-lease.ts (cross-process coordination):
- acquireWriterLease: dedicated writer.lock.sqlite with busy_timeout=0 +
  BEGIN IMMEDIATE. Non-blocking attempt; bounded wait with retryDelayMs.
- writerLockPathFor derives lock path from the target DB path.
- Lease held for the entire build; released on completion or failure.
- Lock DB uses DELETE journal (not WAL); crash/close auto-releases.
- All consumers obey: skill acquires at build start (returns deferred if
  unavailable); app daemon (via worker) acquires for its build cycle.

Build semantics changes:
- affectedSessionIds updated only after successful commit.
- BuildIndexResult gains skipped/skippedFiles for observability.
- Skill finalize failure now fails the build (was silently warned).
- Checkpoint changed to PASSIVE (TRUNCATE reserved for maintenance/exit).
- Skill buildIndex returns { deferred, reason } on lease contention;
  indexer-service reschedules the build (deferredRetryMs) without publishing
  a heartbeat (so the build-deferred state is visible to cross-process
  arbitration).
- Service publishes heartbeat immediately on start() for correct arbitration.

Tests:
- tests/write-transaction.test.mjs: single-shot execution, diagnostics
  propagation, auto-rolled-back transaction detected, rollback failure
  captured as metadata, BEGIN IMMEDIATE semantics.
- tests/writer-lease.test.mjs: acquire/release, contention returns null,
  bounded wait with release during budget.
- tests/app-writer-lease.test.mjs: better-sqlite3 adapter integration.
- tests/app-rollback-guard.test.mjs: rewritten — transient BUSY recovered
  by coordinator, persistent BUSY skips file, begin-busy aborts build,
  live-transaction aborts build, phantom affectedSessionIds prevented.
- tests/daemon-arbitration.test.mjs: skill defers to fresh app heartbeat,
  builds when heartbeat is stale.
- tests/app-indexer-service.test.mjs: new cases for deferred-retry
  scheduling and immediate heartbeat on start.
- app/tests/electron-concurrency.mjs + child: dual-child IPC structure for
  real better-sqlite3 contention (holder acquires lock → build child starts
  → delayed release → result collected; persistent contention bounded).

ADR-0006 updated to reflect the implemented design.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-11 00:42:43 +08:00

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Markdown

# Obelisk
Obelisk is explicit memory infrastructure for coding agents: it indexes local
Claude Code and Codex transcripts into a queryable SQLite evidence layer, and a
CodeAct runtime lets an agent write a small query, run it, and answer from real
session history. This glossary pins the terms that are specific to Obelisk; it is
not a spec.
## Runtime interface
**Runtime interface**:
The public contract, expressed as four verbs — `build`, `search(text)`,
`query(code)`, `attune(code)`. Skill, CLI, and MCP are transports over this same
shape; none of them add their own retrieval surface.
_Avoid_: API, tool surface
**CodeAct**:
The interaction style where an agent writes JavaScript that runs inside the
`query(code)` sandbox and returns JSON, rather than calling many fine-grained
tools. This is Obelisk's core design choice.
_Avoid_: tool-calling, function-calling
**Helper**:
A convenience accessor available only inside the `query(code)` sandbox
(`overview`, `search`, `context`, `sql`, `memories`, …). Helpers are never
promoted to an external tool surface.
## Indexing
**Provider adapter**:
A pure per-source module (claude, codex, later opencode, pi, …) that discovers a
source's transcript files and parses one into a stream of records. It never opens
or writes a database; adding a source means adding one adapter. The shared pure
parse/discover helpers live in `scripts/parsing.mjs`, which imports only
node:fs/path/os — deliberately node:sqlite-free so the compiled providers can be
consumed by the app (whose Electron runtime has no `node:sqlite`).
_Avoid_: parse core, parser, ingest
**Record**:
One normalized row destined for the index (session, message, tool call, tool
result, summary, subagent, workflow, …), emitted by a provider adapter before any
persistence happens.
**Persist layer**:
The single shared, provider- and binding-agnostic writer that consumes records
from any adapter and writes them into an injected SQLite handle inside a
transaction. The binding is injected — `node:sqlite` (skill/CLI) or
`better-sqlite3` (app) — so there is one persist implementation, not one per
binding.
_Avoid_: writer, sink, DAO
**Daemon indexing mode**:
Continuous incremental indexing driven by a long-lived process (the desktop app,
later a CLI daemon) that watches transcript directories and keeps the index fresh
as files change.
_Avoid_: watcher mode, live indexing
**Passive pull mode**:
On-demand incremental indexing performed by the skill when there is no active
daemon: an invocation of the runtime brings the index up to date, then answers.
_Avoid_: lazy indexing, on-read indexing
**index_state**:
The bookkeeping table shared by both indexing modes. It records, per transcript
path, the last-seen `mtime` and `lines_processed` (enabling resume-from-line
incremental indexing), plus heartbeat/last-build markers used for daemon
arbitration.
**Daemon arbitration**:
The policy by which the passive pull mode detects a fresh daemon from the
`__app_heartbeat__` marker and skips every skill-side mutation, including schema
setup, indexing, checkpointing, and `attune`. The heartbeat alone means “the
daemon should write”; `__app_last_successful_build__` records coverage/freshness,
not ownership. Both indexing modes use the same persist layer.
**Writer lease**:
The hard cross-process safety mutex behind daemon arbitration. A writer holds
`BEGIN IMMEDIATE` on `.obelisk/writer.lock.sqlite` for the complete mutation;
manual rebuild holds it through build, target-database replacement, and reopen.
The heartbeat expresses policy, while the writer lease prevents overlapping
writes during races, stale heartbeats, or processes from different versions.
## Memory
**Queryable session memory**:
The evidence layer — real sessions, messages, tool calls, subagents, workflows —
that an agent queries on demand. Obelisk deliberately does this instead of
implicit/ambient memory.
_Avoid_: implicit memory, ambient memory, auto-recall
**Approved durable memory**:
Human-approved conclusions persisted as markdown plus a registry record, via
`attune(code)` calling `remember()`/`forget()`. Auditable and revocable.
_Avoid_: long-term memory, vector memory