fix: coordinate sqlite index writers

Implement the full ADR-0006 plan: three-layer separation of transaction
correctness, retry policy, and cross-process writer coordination.

Layer 1 — scripts/tx.ts (transaction correctness):
- runWriteTransaction executes work exactly once; no internal retry.
- BEGIN IMMEDIATE takes the write lock up front (avoids SQLITE_BUSY_SNAPSHOT).
- Guarded rollback: checks inTransaction() via adapter before attempting
  ROLLBACK; never masks the primary exception.
- WriteTxDiagnostics attached to errors: phase, code, label,
  rollbackSucceeded, rollbackError, transactionActive.
- Binding adapters (betterSqliteTransactionAdapter, nodeSqliteTransactionAdapter)
  mapping better-sqlite3's `.inTransaction` and node:sqlite's `.isTransaction`.
- configureConnection centralizes WAL + synchronous + busy_timeout.

Layer 2 — scripts/write-coordinator.ts (retry policy):
- runRetryableWriteTransaction: bounded retry with total time budget.
- Only retries when the transaction confirmed ended (transactionActive=false)
  and the error is SQLITE_BUSY during work/commit phase.
- BEGIN-phase BUSY = abort entire build (isBeginBusyFailure); the caller
  returns `{ deferred: true, reason: 'writer_busy' }` instead of waiting.
- hasUnusableTransaction detects a still-active transaction after failure;
  aborts the build immediately, never retries.

Layer 3 — scripts/writer-lease.ts (cross-process coordination):
- acquireWriterLease: dedicated writer.lock.sqlite with busy_timeout=0 +
  BEGIN IMMEDIATE. Non-blocking attempt; bounded wait with retryDelayMs.
- writerLockPathFor derives lock path from the target DB path.
- Lease held for the entire build; released on completion or failure.
- Lock DB uses DELETE journal (not WAL); crash/close auto-releases.
- All consumers obey: skill acquires at build start (returns deferred if
  unavailable); app daemon (via worker) acquires for its build cycle.

Build semantics changes:
- affectedSessionIds updated only after successful commit.
- BuildIndexResult gains skipped/skippedFiles for observability.
- Skill finalize failure now fails the build (was silently warned).
- Checkpoint changed to PASSIVE (TRUNCATE reserved for maintenance/exit).
- Skill buildIndex returns { deferred, reason } on lease contention;
  indexer-service reschedules the build (deferredRetryMs) without publishing
  a heartbeat (so the build-deferred state is visible to cross-process
  arbitration).
- Service publishes heartbeat immediately on start() for correct arbitration.

Tests:
- tests/write-transaction.test.mjs: single-shot execution, diagnostics
  propagation, auto-rolled-back transaction detected, rollback failure
  captured as metadata, BEGIN IMMEDIATE semantics.
- tests/writer-lease.test.mjs: acquire/release, contention returns null,
  bounded wait with release during budget.
- tests/app-writer-lease.test.mjs: better-sqlite3 adapter integration.
- tests/app-rollback-guard.test.mjs: rewritten — transient BUSY recovered
  by coordinator, persistent BUSY skips file, begin-busy aborts build,
  live-transaction aborts build, phantom affectedSessionIds prevented.
- tests/daemon-arbitration.test.mjs: skill defers to fresh app heartbeat,
  builds when heartbeat is stale.
- tests/app-indexer-service.test.mjs: new cases for deferred-retry
  scheduling and immediate heartbeat on start.
- app/tests/electron-concurrency.mjs + child: dual-child IPC structure for
  real better-sqlite3 contention (holder acquires lock → build child starts
  → delayed release → result collected; persistent contention bounded).

ADR-0006 updated to reflect the implemented design.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
tommy0103
2026-07-11 00:42:43 +08:00
co-authored by Claude Opus 4.8
parent 44029676d4
commit e3e61cc7ab
25 changed files with 2173 additions and 471 deletions
+2 -1
View File
@@ -11,7 +11,8 @@
"dist": "electron-vite build && electron-builder --mac --win --linux",
"dist:mac": "electron-vite build && electron-builder --mac",
"dist:win": "electron-vite build && electron-builder --win",
"dist:linux": "electron-vite build && electron-builder --linux"
"dist:linux": "electron-vite build && electron-builder --linux",
"test:electron": "electron-vite build && electron --no-sandbox tests/electron-concurrency.mjs"
},
"build": {
"appId": "com.obelisk.app",
+102 -22
View File
@@ -9,6 +9,7 @@ import { writeHeartbeat } from './indexer.ts';
import { createIndexerService } from './indexer-service.ts';
import { createWorkerBuildIndex } from './indexer-worker-client.ts';
import { buildRecapExportQuery } from './recap-capture-query.ts';
import { acquireWriterLease, writerLockPathFor } from '../../../scripts/writer-lease.ts';
const __dirname = path.dirname(fileURLToPath(import.meta.url));
@@ -41,6 +42,16 @@ let db;
let indexerService;
let indexerWorker;
type WriterLeaseMode = 'acquire' | 'caller-held';
function acquireAppWriterLease(dbPath: string, waitMs = 0) {
return acquireWriterLease({
lockPath: writerLockPathFor(dbPath),
openDb: lockPath => new Database(lockPath),
waitMs,
});
}
function getConfiguredClaudeDir() {
const persisted = loadPersistedSettings();
return persisted.claudeDir || DEFAULT_CLAUDE_DIR;
@@ -60,15 +71,25 @@ function getPathsForClaudeDir(claudeDir = getConfiguredClaudeDir(), codexDir = g
};
}
function migrateLegacyDbIfNeeded(paths = getPathsForClaudeDir()) {
function migrateLegacyDbIfNeeded(
paths = getPathsForClaudeDir(),
{ writerLeaseMode = 'acquire' }: { writerLeaseMode?: WriterLeaseMode } = {},
) {
if (fs.existsSync(paths.dbPath)) return;
const legacyDbPath = path.join(paths.claudeDir, 'obelisk.sqlite');
if (!fs.existsSync(legacyDbPath)) return;
const lease = writerLeaseMode === 'acquire' ? acquireAppWriterLease(paths.dbPath) : null;
if (writerLeaseMode === 'acquire' && !lease) return false;
try {
if (fs.existsSync(paths.dbPath)) return true;
fs.mkdirSync(path.dirname(paths.dbPath), { recursive: true });
fs.copyFileSync(legacyDbPath, paths.dbPath);
return true;
} catch (error) {
console.warn?.(`Obelisk legacy DB migration skipped: ${(error as Error).message}`);
return false;
} finally {
lease?.release();
}
}
@@ -151,15 +172,40 @@ function closeDb() {
db = null;
}
function openDb(dbPath = getPathsForClaudeDir().dbPath) {
function openDb(
dbPath = getPathsForClaudeDir().dbPath,
{ writerLeaseMode = 'acquire' }: { writerLeaseMode?: WriterLeaseMode } = {},
) {
closeDb();
if (!fs.existsSync(dbPath)) return null;
db = new Database(dbPath, { readonly: false });
db.pragma('journal_mode = WAL');
migrateDb(db);
db.pragma('busy_timeout = 5000');
const lease = writerLeaseMode === 'acquire' ? acquireAppWriterLease(dbPath) : null;
if (writerLeaseMode === 'caller-held' || lease) {
try {
db.pragma('journal_mode = WAL');
migrateDb(db);
} finally {
lease?.release();
}
}
return db;
}
function runAppDbWrite(work: () => void): boolean {
if (!db) return false;
const lease = acquireAppWriterLease(getPathsForClaudeDir().dbPath, 250);
if (!lease) {
throw new Error('Obelisk index writer is busy; memory change was not applied');
}
try {
work();
return true;
} finally {
lease.release();
}
}
function notifyIndexUpdated(result: { affectedSessionIds?: unknown } = {}) {
const affectedSessionIds = Array.isArray(result.affectedSessionIds)
? [...new Set(result.affectedSessionIds.filter(Boolean))]
@@ -200,8 +246,14 @@ function startIndexerService({ buildOnStart = false } = {}) {
projectsDir: paths.projectsDir,
dbPath: paths.dbPath,
});
openDb(paths.dbPath);
notifyIndexUpdated(result);
if (result?.deferred) {
if (Array.isArray(result.affectedSessionIds) && result.affectedSessionIds.length) {
notifyIndexUpdated(result);
}
} else {
openDb(paths.dbPath);
notifyIndexUpdated(result);
}
return result;
},
writeHeartbeat: () => writeHeartbeat({ dbPath: paths.dbPath }),
@@ -520,16 +572,16 @@ ipcMain.handle('db:readMemoryFile', (_, filePath) => {
});
ipcMain.handle('db:archiveMemory', (_, id, reason) => {
if (!db) return false;
db.prepare(`UPDATE memories SET deleted_at = ?, deleted_reason = ? WHERE id = ?`)
.run(new Date().toISOString(), reason || 'Archived via panel', id);
return true;
return runAppDbWrite(() => {
db.prepare(`UPDATE memories SET deleted_at = ?, deleted_reason = ? WHERE id = ?`)
.run(new Date().toISOString(), reason || 'Archived via panel', id);
});
});
ipcMain.handle('db:restoreMemory', (_, id) => {
if (!db) return false;
db.prepare(`UPDATE memories SET deleted_at = NULL, deleted_reason = NULL WHERE id = ?`).run(id);
return true;
return runAppDbWrite(() => {
db.prepare(`UPDATE memories SET deleted_at = NULL, deleted_reason = NULL WHERE id = ?`).run(id);
});
});
ipcMain.handle('db:getProjects', (_, opts = {}) => {
@@ -830,8 +882,27 @@ ipcMain.handle('settings:rebuildIndex', async () => {
indexerWorker = createWorkerBuildIndex();
}
cleanupDbFiles(tempDbPath);
let writerLease: ReturnType<typeof acquireWriterLease> = null;
try {
migrateLegacyDbIfNeeded(paths);
const writerLeasePath = writerLockPathFor(paths.dbPath);
writerLease = acquireWriterLease({
lockPath: writerLeasePath,
openDb: lockPath => new Database(lockPath),
waitMs: 2000,
});
if (!writerLease) {
return {
files: 0,
latestSourceMtime: 0,
affectedSessionIds: [],
ftsRebuilt: false,
skipped: 0,
skippedFiles: [],
deferred: true,
reason: 'writer_busy',
};
}
migrateLegacyDbIfNeeded(paths, { writerLeaseMode: 'caller-held' });
const result = await indexerWorker.buildIndex({
reason: 'manual-rebuild',
force: true,
@@ -840,21 +911,30 @@ ipcMain.handle('settings:rebuildIndex', async () => {
projectsDir: paths.projectsDir,
dbPath: tempDbPath,
preserveDbPath: fs.existsSync(paths.dbPath) ? paths.dbPath : null,
writerLeasePath,
writerLeaseMode: 'caller-held',
});
if (result?.deferred) return result;
closeDb();
replaceDbWithTemp(tempDbPath, paths.dbPath);
openDb(paths.dbPath);
openDb(paths.dbPath, { writerLeaseMode: 'caller-held' });
notifyIndexUpdated(result);
return result;
} finally {
cleanupDbFiles(tempDbPath);
if (!db) {
try {
openDb(paths.dbPath);
} catch (error) {
console.warn?.(`Obelisk DB reopen after rebuild failed: ${(error as Error).message}`);
try {
cleanupDbFiles(tempDbPath);
if (!db) {
try {
openDb(paths.dbPath, {
writerLeaseMode: writerLease ? 'caller-held' : 'acquire',
});
} catch (error) {
console.warn?.(`Obelisk DB reopen after rebuild failed: ${(error as Error).message}`);
}
}
} finally {
writerLease?.release();
if (shouldRestartWatcher) startIndexerService({ buildOnStart: false });
}
if (shouldRestartWatcher) startIndexerService({ buildOnStart: false });
}
});
+42 -9
View File
@@ -8,6 +8,7 @@ const DEFAULT_DEBOUNCE_MS = 2000;
const DEFAULT_STABILITY_MS = 500;
const DEFAULT_HEARTBEAT_MS = 30000;
const DEFAULT_WATCH_RETRY_MS = 5000;
const DEFAULT_DEFERRED_RETRY_MS = 250;
type TimerHandle = ReturnType<typeof setTimeout>;
@@ -22,6 +23,15 @@ interface Watcher {
close(): unknown;
}
interface IndexerBuildResult {
deferred?: boolean;
}
type IndexerBuild = (args: {
reason?: string;
changedPaths?: string[];
}) => IndexerBuildResult | void | Promise<IndexerBuildResult | void>;
interface IndexerServiceOptions {
projectsDir?: string;
watchDirs?: string | string[];
@@ -29,8 +39,9 @@ interface IndexerServiceOptions {
stabilityMs?: number;
heartbeatMs?: number;
watchRetryMs?: number;
buildIndex?: (args: { reason?: string; changedPaths?: string[] }) => unknown;
writeHeartbeat?: () => void;
deferredRetryMs?: number;
buildIndex?: IndexerBuild;
writeHeartbeat?: () => unknown;
watchProjects?: (onChange: (changedPath: string) => void) => Watcher | null;
chokidar?: any;
timers?: Timers;
@@ -44,6 +55,7 @@ function createIndexerService({
stabilityMs = DEFAULT_STABILITY_MS,
heartbeatMs = DEFAULT_HEARTBEAT_MS,
watchRetryMs = DEFAULT_WATCH_RETRY_MS,
deferredRetryMs = DEFAULT_DEFERRED_RETRY_MS,
buildIndex,
writeHeartbeat = () => {},
watchProjects,
@@ -100,6 +112,7 @@ function createIndexerService({
let stabilityTimer: TimerHandle | null = null;
let heartbeatTimer: TimerHandle | null = null;
let watchRetryTimer: TimerHandle | null = null;
let deferredRetryTimer: TimerHandle | null = null;
let watcher: Watcher | null = null;
let stopped = false;
let running = false;
@@ -124,6 +137,15 @@ function createIndexerService({
return paths;
};
const publishHeartbeat = () => {
try {
return writeHeartbeat();
} catch (error) {
logger.warn?.(`Obelisk heartbeat failed: ${(error as Error).message}`);
return false;
}
};
const runBuildNow = (reason = "manual", paths: string[] | undefined = undefined) => {
addChangedPath(paths);
if (stopped) return idlePromise;
@@ -135,8 +157,18 @@ function createIndexerService({
pending = false;
const buildChangedPaths = takeChangedPaths();
idlePromise = (async () => {
await buildIndex({ reason, changedPaths: buildChangedPaths });
writeHeartbeat();
const result = await buildIndex({ reason, changedPaths: buildChangedPaths });
if (result?.deferred) {
addChangedPath(buildChangedPaths);
if (!stopped && !deferredRetryTimer) {
deferredRetryTimer = timers.setTimeout(() => {
deferredRetryTimer = null;
runBuildNow('writer-lease');
}, deferredRetryMs);
}
return;
}
publishHeartbeat();
})()
.catch((error) => {
// A build in flight when the service is stopped (e.g. a manual rebuild
@@ -158,6 +190,8 @@ function createIndexerService({
addChangedPath(changedPath);
lastReason = reason;
if (running) pending = true;
if (deferredRetryTimer) timers.clearTimeout(deferredRetryTimer);
deferredRetryTimer = null;
if (buildTimer) timers.clearTimeout(buildTimer);
if (stabilityTimer) timers.clearTimeout(stabilityTimer);
buildTimer = timers.setTimeout(() => {
@@ -186,15 +220,12 @@ function createIndexerService({
const start = ({ buildOnStart = true } = {}) => {
stopped = false;
publishHeartbeat();
if (buildOnStart) scheduleBuild('startup');
startWatching();
if (typeof timers.setInterval === 'function') {
heartbeatTimer = timers.setInterval(() => {
try {
writeHeartbeat();
} catch (error) {
logger.warn?.(`Obelisk heartbeat failed: ${(error as Error).message}`);
}
publishHeartbeat();
}, heartbeatMs);
}
};
@@ -208,6 +239,8 @@ function createIndexerService({
stabilityTimer = null;
if (watchRetryTimer) timers.clearTimeout(watchRetryTimer);
watchRetryTimer = null;
if (deferredRetryTimer) timers.clearTimeout(deferredRetryTimer);
deferredRetryTimer = null;
if (heartbeatTimer && typeof timers.clearInterval === 'function') timers.clearInterval(heartbeatTimer);
heartbeatTimer = null;
if (watcher?.close) watcher.close();
+266 -124
View File
@@ -6,6 +6,9 @@ import Database from 'better-sqlite3';
import { parse as claudeParse } from '../../../scripts/providers/claude.ts';
import { parse as codexParse } from '../../../scripts/providers/codex.ts';
import { persist } from '../../../scripts/persist.ts';
import { runWriteTransaction, configureConnection, betterSqliteTransactionAdapter } from '../../../scripts/tx.ts';
import { acquireWriterLease, writerLockPathFor } from '../../../scripts/writer-lease.ts';
import { runRetryableWriteTransaction, isBeginBusyFailure, hasUnusableTransaction } from '../../../scripts/write-coordinator.ts';
import {
inferProjectPath,
isDir,
@@ -35,15 +38,6 @@ interface FileInfo {
source?: string;
}
// A rollback inside a catch must never throw over the real error. SQLite
// auto-rolls back certain failures (SQLITE_BUSY, disk full, ...); a following
// explicit ROLLBACK then throws "cannot rollback - no transaction is active",
// which would both mask the true cause and turn a skippable per-file error into
// a whole-build failure. Swallow only the rollback's own error.
function safeRollback(db: { exec: (sql: string) => unknown }) {
try { db.exec('ROLLBACK'); } catch { /* no active transaction */ }
}
function resolveSchemaPath() {
const candidates = [
path.join(__dirname, 'schema.sql'),
@@ -63,8 +57,7 @@ function installSchema(db, schemaPath = resolveSchemaPath()) {
function openIndexDb({ dbPath = DEFAULT_DB_PATH, schemaPath = resolveSchemaPath(), DatabaseImpl = Database }: { dbPath?: string; schemaPath?: string; DatabaseImpl?: new (dbPath: string) => any } = {}) {
fs.mkdirSync(path.dirname(dbPath), { recursive: true });
const db = new DatabaseImpl(dbPath);
db.pragma('journal_mode = WAL');
db.pragma('synchronous = NORMAL');
configureConnection(db, { busyTimeoutMs: 250 });
installSchema(db, schemaPath);
return db;
}
@@ -138,7 +131,10 @@ function normalizeChangedPath(projectsDir, changedPath) {
}
function jsonlFileInfoFromPath(projectsDir, changedPath) {
const fp = normalizeChangedPath(projectsDir, changedPath);
let fp = normalizeChangedPath(projectsDir, changedPath);
if (fp?.toLowerCase().endsWith('.meta.json')) {
fp = fp.slice(0, -'.meta.json'.length) + '.jsonl';
}
if (!fp || !fp.endsWith('.jsonl')) return null;
if (!fs.existsSync(fp)) return null;
const rel = path.relative(projectsDir, fp);
@@ -365,14 +361,16 @@ function indexCodexSessionIndex(db, { codexDir = DEFAULT_CODEX_DIR } = {}) {
const indexPath = path.join(codexDir, 'session_index.jsonl');
if (!fs.existsSync(indexPath)) return;
readLines(indexPath, (line) => {
let item;
try {
const item = JSON.parse(line);
if (!item.id || !item.thread_name) return;
db.prepare('UPDATE sessions SET title=COALESCE(title, ?), ended_at=COALESCE(ended_at, ?) WHERE id=? AND source=?')
.run(item.thread_name, item.updated_at || null, codexDbId(item.id), 'codex');
item = JSON.parse(line);
} catch (error) {
console.warn(`Warning: malformed Codex session index line: ${(error as Error).message}`);
return;
}
if (!item.id || !item.thread_name) return;
db.prepare('UPDATE sessions SET title=COALESCE(title, ?), ended_at=COALESCE(ended_at, ?) WHERE id=? AND source=?')
.run(item.thread_name, item.updated_at || null, codexDbId(item.id), 'codex');
});
}
@@ -392,22 +390,25 @@ function refreshSessionProjectPaths(db) {
}
function indexSubagentMeta(db, fi) {
if (!fi.isSubagent) return;
if (!fi.isSubagent) return false;
const mp = fi.path.replace('.jsonl', '.meta.json');
if (!fs.existsSync(mp)) return;
if (!fs.existsSync(mp)) return false;
let meta;
try {
const meta = JSON.parse(fs.readFileSync(mp, 'utf8'));
const tok = db.prepare('SELECT COALESCE(SUM(input_tokens),0)+COALESCE(SUM(output_tokens),0) as t FROM messages WHERE agent_id=?').get(fi.agentId);
const ts = db.prepare('SELECT MIN(timestamp) as t0, MAX(timestamp) as t1 FROM messages WHERE agent_id=?').get(fi.agentId);
const dur = ts?.t0 && ts?.t1 ? new Date(ts.t1).getTime() - new Date(ts.t0).getTime() : null;
if (fi.workflowRunId) {
db.prepare('INSERT OR REPLACE INTO workflow_agents (agent_id,run_id,session_id,agent_type,description) VALUES(?,?,?,?,?)').run(fi.agentId, fi.workflowRunId, fi.sessionId, meta.agentType||null, meta.description||null);
} else {
db.prepare('INSERT OR REPLACE INTO subagents VALUES(?,?,?,?,?,?,?)').run(fi.agentId, fi.sessionId, meta.toolUseId||null, meta.agentType||null, meta.description||null, dur, tok?.t||0);
}
meta = JSON.parse(fs.readFileSync(mp, 'utf8'));
} catch (error) {
console.warn(`Warning: failed to read subagent meta ${mp}: ${(error as Error).message}`);
return false;
}
const tok = db.prepare('SELECT COALESCE(SUM(input_tokens),0)+COALESCE(SUM(output_tokens),0) as t FROM messages WHERE agent_id=?').get(fi.agentId);
const ts = db.prepare('SELECT MIN(timestamp) as t0, MAX(timestamp) as t1 FROM messages WHERE agent_id=?').get(fi.agentId);
const dur = ts?.t0 && ts?.t1 ? new Date(ts.t1).getTime() - new Date(ts.t0).getTime() : null;
if (fi.workflowRunId) {
db.prepare('INSERT OR REPLACE INTO workflow_agents (agent_id,run_id,session_id,agent_type,description) VALUES(?,?,?,?,?)').run(fi.agentId, fi.workflowRunId, fi.sessionId, meta.agentType||null, meta.description||null);
} else {
db.prepare('INSERT OR REPLACE INTO subagents VALUES(?,?,?,?,?,?,?)').run(fi.agentId, fi.sessionId, meta.toolUseId||null, meta.agentType||null, meta.description||null, dur, tok?.t||0);
}
return true;
}
function indexWorkflows(db, { projectsDir = DEFAULT_PROJECTS_DIR } = {}) {
@@ -426,23 +427,25 @@ function indexWorkflows(db, { projectsDir = DEFAULT_PROJECTS_DIR } = {}) {
try { wfFiles = fs.readdirSync(wd); } catch { continue; }
for (const f of wfFiles) {
if (!f.endsWith('.json')) continue;
let wf;
try {
const wf = JSON.parse(fs.readFileSync(path.join(wd, f), 'utf8'));
if (!wf.runId) continue;
const ac = db.prepare('SELECT COUNT(*) as c FROM workflow_agents WHERE run_id=?').get(wf.runId);
db.prepare('INSERT OR REPLACE INTO workflows (run_id,session_id,task_id,script,result_json,timestamp,agent_count,duration_ms,total_tokens,status,workflow_name) VALUES(?,?,?,?,?,?,?,?,?,?,?)').run(
wf.runId, sd, wf.taskId||null, wf.script||null,
wf.result ? JSON.stringify(wf.result) : null, wf.timestamp||null, ac?.c||0,
wf.durationMs||null, wf.totalTokens||null, wf.status||null, wf.workflowName||null);
const progress = wf.workflowProgress || [];
for (const item of progress) {
if (item.type !== 'workflow_agent' || !item.agentId) continue;
db.prepare('UPDATE workflow_agents SET phase=?, label=?, model=?, state=?, duration_ms=?, tokens=?, tool_calls=? WHERE agent_id=?').run(
item.phaseTitle||null, item.label||null, item.model||null, item.state||null,
item.durationMs||null, item.tokens||null, item.toolCalls||null, 'agent-' + item.agentId);
}
wf = JSON.parse(fs.readFileSync(path.join(wd, f), 'utf8'));
} catch (error) {
console.warn(`Warning: failed to index workflow ${f}: ${(error as Error).message}`);
console.warn(`Warning: failed to read workflow ${f}: ${(error as Error).message}`);
continue;
}
if (!wf.runId) continue;
const ac = db.prepare('SELECT COUNT(*) as c FROM workflow_agents WHERE run_id=?').get(wf.runId);
db.prepare('INSERT OR REPLACE INTO workflows (run_id,session_id,task_id,script,result_json,timestamp,agent_count,duration_ms,total_tokens,status,workflow_name) VALUES(?,?,?,?,?,?,?,?,?,?,?)').run(
wf.runId, sd, wf.taskId||null, wf.script||null,
wf.result ? JSON.stringify(wf.result) : null, wf.timestamp||null, ac?.c||0,
wf.durationMs||null, wf.totalTokens||null, wf.status||null, wf.workflowName||null);
const progress = wf.workflowProgress || [];
for (const item of progress) {
if (item.type !== 'workflow_agent' || !item.agentId) continue;
db.prepare('UPDATE workflow_agents SET phase=?, label=?, model=?, state=?, duration_ms=?, tokens=?, tool_calls=? WHERE agent_id=?').run(
item.phaseTitle||null, item.label||null, item.model||null, item.state||null,
item.durationMs||null, item.tokens||null, item.toolCalls||null, 'agent-' + item.agentId);
}
}
}
@@ -452,12 +455,14 @@ function indexWorkflows(db, { projectsDir = DEFAULT_PROJECTS_DIR } = {}) {
function indexHistory(db, { historyPath = DEFAULT_HISTORY_PATH } = {}) {
if (!fs.existsSync(historyPath)) return;
readLines(historyPath, (line) => {
let item;
try {
const o = JSON.parse(line);
if (o.sessionId && o.title) db.prepare('UPDATE sessions SET title=? WHERE id=? AND title IS NULL').run(o.title, o.sessionId);
item = JSON.parse(line);
} catch (error) {
console.warn(`Warning: malformed history line: ${(error as Error).message}`);
return;
}
if (item.sessionId && item.title) db.prepare('UPDATE sessions SET title=? WHERE id=? AND title IS NULL').run(item.title, item.sessionId);
});
}
@@ -466,9 +471,13 @@ function rebuildFts(db) {
db.exec("INSERT INTO memories_fts(memories_fts) VALUES('rebuild')");
}
function checkpointDb(db) {
// PASSIVE by default: it checkpoints what it can without blocking concurrent
// readers/writers, so it is safe to run after every build. A blocking TRUNCATE
// (which reclaims the -wal file but needs exclusive access and can contend with
// the daemon + queries) is reserved for maintenance/exit — pass mode explicitly.
function checkpointDb(db, mode = 'PASSIVE') {
try {
db.pragma('wal_checkpoint(TRUNCATE)');
db.pragma(`wal_checkpoint(${mode})`);
} catch {}
}
@@ -497,13 +506,30 @@ function writeIndexMarker(db, key, value = Date.now()) {
db.prepare('INSERT OR REPLACE INTO index_state (jsonl_path, mtime, lines_processed) VALUES (?, ?, 0)').run(key, value);
}
function writeHeartbeat({ dbPath = DEFAULT_DB_PATH, DatabaseImpl = Database } = {}) {
function writeHeartbeat({
dbPath = DEFAULT_DB_PATH,
writerLeasePath = writerLockPathFor(dbPath),
DatabaseImpl = Database,
LockDatabaseImpl = DatabaseImpl,
} = {}) {
if (!fs.existsSync(dbPath)) return;
const db = new DatabaseImpl(dbPath);
const lease = acquireWriterLease({
lockPath: writerLeasePath,
openDb: lockPath => new LockDatabaseImpl(lockPath),
});
if (!lease) return false;
try {
writeIndexMarker(db, '__app_heartbeat__');
const db = new DatabaseImpl(dbPath);
configureConnection(db, { busyTimeoutMs: 0 });
const txDb = betterSqliteTransactionAdapter(db);
try {
runWriteTransaction(txDb, () => writeIndexMarker(db, '__app_heartbeat__'), { label: 'heartbeat' });
return true;
} finally {
db.close();
}
} finally {
db.close();
lease.release();
}
}
@@ -515,9 +541,19 @@ interface BuildIndexOptions {
dbPath?: string;
schemaPath?: string;
DatabaseImpl?: new (dbPath: string) => any;
LockDatabaseImpl?: new (dbPath: string) => any;
force?: boolean;
changedPaths?: string[];
preserveDbPath?: string | null;
writerLeasePath?: string;
writerLeaseWaitMs?: number;
writerLeaseMode?: 'acquire' | 'caller-held';
}
interface SkippedFile {
path: string;
error: string;
diagnostics?: unknown;
}
interface BuildIndexResult {
@@ -525,6 +561,27 @@ interface BuildIndexResult {
latestSourceMtime: number;
affectedSessionIds: string[];
ftsRebuilt: boolean;
skipped: number;
skippedFiles: SkippedFile[];
deferred: boolean;
reason?: string;
}
function deferredBuildResult(
reason: string,
overrides: Partial<Omit<BuildIndexResult, 'deferred' | 'reason'>> = {},
): BuildIndexResult {
return {
files: 0,
latestSourceMtime: 0,
affectedSessionIds: [],
ftsRebuilt: false,
skipped: 0,
skippedFiles: [],
...overrides,
deferred: true,
reason,
};
}
function buildIndex({
@@ -535,90 +592,175 @@ function buildIndex({
dbPath = DEFAULT_DB_PATH,
schemaPath = resolveSchemaPath(),
DatabaseImpl = Database,
LockDatabaseImpl = DatabaseImpl,
force = false,
changedPaths = undefined,
preserveDbPath = null,
writerLeasePath = writerLockPathFor(dbPath),
writerLeaseWaitMs = 2000,
writerLeaseMode = 'acquire',
}: BuildIndexOptions = {}): BuildIndexResult {
const db = openIndexDb({ dbPath, schemaPath, DatabaseImpl });
let messageFtsTriggersDropped = false;
if (preserveDbPath && path.resolve(preserveDbPath) !== path.resolve(dbPath)) {
copyMemoriesFromDb(db, preserveDbPath);
if (writerLeaseMode !== 'acquire' && writerLeaseMode !== 'caller-held') {
throw new Error(`Unknown writer lease mode: ${writerLeaseMode}`);
}
const files = [
...discoverJsonlFiles({ projectsDir, changedPaths: force ? undefined : changedPaths }),
...discoverCodexJsonlFiles({ codexDir, changedPaths: force ? undefined : changedPaths }),
];
const latestSourceMtime = files.reduce((latest, file) => {
try {
return Math.max(latest, fs.statSync(file.path).mtimeMs);
} catch {
return latest;
let lease: ReturnType<typeof acquireWriterLease> = null;
if (writerLeaseMode === 'acquire') {
lease = acquireWriterLease({
lockPath: writerLeasePath,
openDb: lockPath => new LockDatabaseImpl(lockPath),
waitMs: writerLeaseWaitMs,
});
if (!lease) {
return deferredBuildResult('writer_busy');
}
}, 0);
}
try {
if (force) {
dropMessageFtsTriggers(db);
messageFtsTriggersDropped = true;
db.prepare("DELETE FROM index_state WHERE substr(jsonl_path, 1, 2) != '__'").run();
db.prepare("DELETE FROM messages").run();
db.prepare("DELETE FROM tool_calls").run();
db.prepare("DELETE FROM tool_results").run();
db.prepare("DELETE FROM sessions").run();
db.prepare("DELETE FROM summaries").run();
db.prepare("DELETE FROM subagents").run();
db.prepare("DELETE FROM workflows").run();
db.prepare("DELETE FROM workflow_agents").run();
}
const affectedSessionIds = new Set<string>();
if (Array.isArray(changedPaths)) {
for (const changedPath of changedPaths) {
const sessionId = sessionIdFromChangedPath(projectsDir, changedPath);
if (sessionId) affectedSessionIds.add(sessionId);
}
}
for (const file of files) {
db.exec('BEGIN');
try {
const indexed = file.source === 'codex' ? indexCodexFile(db, file) : indexClaudeFile(db, file);
if (indexed?.sessionId) affectedSessionIds.add(indexed.sessionId);
if (file.source !== 'codex') indexSubagentMeta(db, file);
db.exec('COMMIT');
} catch (error) {
safeRollback(db);
console.warn(`Warning: failed to index ${file.path}: ${(error as Error).message}`);
}
}
db.exec('BEGIN');
let ftsRebuilt = false;
const db = openIndexDb({ dbPath, schemaPath, DatabaseImpl });
const txDb = betterSqliteTransactionAdapter(db);
let messageFtsTriggersDropped = false;
try {
indexWorkflows(db, { projectsDir });
refreshSessionProjectPaths(db);
indexHistory(db, { historyPath });
indexCodexSessionIndex(db, { codexDir });
if (messageFtsTriggersDropped) installSchema(db, schemaPath);
ftsRebuilt = ensureFtsReady(db, { force });
writeIndexMarker(db, '__last_build__');
writeIndexMarker(db, '__app_heartbeat__');
writeIndexMarker(db, '__app_last_successful_build__');
writeIndexMarker(db, '__indexer_owner_app__');
if (latestSourceMtime) writeIndexMarker(db, '__last_source_mtime__', latestSourceMtime);
db.exec('COMMIT');
} catch (error) {
safeRollback(db);
throw error;
}
return { files: files.length, latestSourceMtime, affectedSessionIds: [...affectedSessionIds], ftsRebuilt };
} finally {
if (messageFtsTriggersDropped) {
try {
installSchema(db, schemaPath);
} catch (error) {
console.warn(`Warning: failed to restore message FTS triggers: ${(error as Error).message}`);
if (preserveDbPath && path.resolve(preserveDbPath) !== path.resolve(dbPath)) {
copyMemoriesFromDb(db, preserveDbPath);
}
const files = [
...discoverJsonlFiles({ projectsDir, changedPaths: force ? undefined : changedPaths }),
...discoverCodexJsonlFiles({ codexDir, changedPaths: force ? undefined : changedPaths }),
];
const latestSourceMtime = files.reduce((latest, file) => {
try {
return Math.max(latest, fs.statSync(file.path).mtimeMs);
} catch {
return latest;
}
}, 0);
try {
if (force) {
runRetryableWriteTransaction(txDb, () => {
dropMessageFtsTriggers(db);
db.prepare("DELETE FROM index_state WHERE substr(jsonl_path, 1, 2) != '__'").run();
db.prepare("DELETE FROM messages").run();
db.prepare("DELETE FROM tool_calls").run();
db.prepare("DELETE FROM tool_results").run();
db.prepare("DELETE FROM sessions").run();
db.prepare("DELETE FROM summaries").run();
db.prepare("DELETE FROM subagents").run();
db.prepare("DELETE FROM workflows").run();
db.prepare("DELETE FROM workflow_agents").run();
}, { label: 'force-cleanup' });
messageFtsTriggersDropped = true;
}
} catch (error) {
if (isBeginBusyFailure(error)) {
return deferredBuildResult('database_busy', {
files: files.length,
latestSourceMtime,
});
}
throw error;
}
const affectedSessionIds = new Set<string>();
const finalizeAffectedSessionIds = new Set<string>();
const changedMetaJsonlPaths = new Set<string>();
if (Array.isArray(changedPaths)) {
for (const changedPath of changedPaths) {
const sessionId = sessionIdFromChangedPath(projectsDir, changedPath);
const normalizedChangedPath = normalizeChangedPath(projectsDir, changedPath);
const isMetaChange = normalizedChangedPath?.toLowerCase().endsWith('.meta.json');
if (isMetaChange && normalizedChangedPath) {
changedMetaJsonlPaths.add(
normalizedChangedPath.slice(0, -'.meta.json'.length) + '.jsonl',
);
}
// Transcript files report their session only after their own transaction
// commits. Workflow changes are applied during finalize, so stage those
// IDs until the finalize transaction commits. Meta files map back to their
// transcript transaction and are reported only after that commit.
if (sessionId && !changedPath.toLowerCase().endsWith('.jsonl') && !isMetaChange) {
finalizeAffectedSessionIds.add(sessionId);
}
}
}
const skipped: SkippedFile[] = [];
for (const file of files) {
try {
// The write is committed before affectedSessionIds is updated, so a
// failed/rolled-back file never reports a phantom updated session.
const indexed = runRetryableWriteTransaction(txDb, () => {
const result = file.source === 'codex' ? indexCodexFile(db, file) : indexClaudeFile(db, file);
const metaIndexed = file.source !== 'codex' && indexSubagentMeta(db, file);
if (!result?.sessionId && metaIndexed && changedMetaJsonlPaths.has(file.path)) {
return { sessionId: file.sessionId, path: file.path };
}
return result;
}, { label: `file:${file.path}` });
if (indexed?.sessionId) affectedSessionIds.add(indexed.sessionId);
} catch (error) {
if (isBeginBusyFailure(error)) {
return deferredBuildResult('database_busy', {
files: files.length,
latestSourceMtime,
affectedSessionIds: [...affectedSessionIds],
skipped: skipped.length,
skippedFiles: skipped,
});
}
if (hasUnusableTransaction(error)) throw error;
skipped.push({ path: file.path, error: (error as Error).message, diagnostics: (error as { obelisk?: unknown }).obelisk });
console.warn(`Warning: failed to index ${file.path}: ${(error as Error).message}`);
}
}
let ftsRebuilt = false;
// Finalize is one transaction; a failure here fails the whole build (the
// index would otherwise be left inconsistent).
try {
runRetryableWriteTransaction(txDb, () => {
indexWorkflows(db, { projectsDir });
refreshSessionProjectPaths(db);
indexHistory(db, { historyPath });
indexCodexSessionIndex(db, { codexDir });
if (messageFtsTriggersDropped) installSchema(db, schemaPath);
ftsRebuilt = ensureFtsReady(db, { force });
writeIndexMarker(db, '__last_build__');
writeIndexMarker(db, '__app_last_successful_build__');
writeIndexMarker(db, '__indexer_owner_app__');
if (latestSourceMtime) writeIndexMarker(db, '__last_source_mtime__', latestSourceMtime);
}, { label: 'finalize' });
} catch (error) {
if (isBeginBusyFailure(error)) {
return deferredBuildResult('database_busy', {
files: files.length,
latestSourceMtime,
affectedSessionIds: [...affectedSessionIds],
skipped: skipped.length,
skippedFiles: skipped,
});
}
throw error;
}
for (const sessionId of finalizeAffectedSessionIds) affectedSessionIds.add(sessionId);
return {
files: files.length,
latestSourceMtime,
affectedSessionIds: [...affectedSessionIds],
ftsRebuilt,
skipped: skipped.length,
skippedFiles: skipped,
deferred: false,
};
} finally {
if (messageFtsTriggersDropped) {
try {
installSchema(db, schemaPath);
} catch (error) {
console.warn(`Warning: failed to restore message FTS triggers: ${(error as Error).message}`);
}
}
checkpointDb(db);
db.close();
}
checkpointDb(db);
db.close();
} finally {
lease?.release();
}
}
+27
View File
@@ -0,0 +1,27 @@
import { createRequire } from 'node:module';
import { createInterface } from 'node:readline';
const require = createRequire(import.meta.url);
const Database = require('better-sqlite3');
const [mode, payloadJson] = process.argv.slice(2);
const payload = JSON.parse(payloadJson || '{}');
if (mode === 'holder') {
const db = new Database(payload.lockPath);
db.pragma('busy_timeout = 0');
db.exec('BEGIN IMMEDIATE');
process.stdout.write('READY\n');
const input = createInterface({ input: process.stdin });
await new Promise(resolve => input.once('line', resolve));
db.exec('ROLLBACK');
db.close();
input.close();
} else if (mode === 'build') {
const { buildIndex } = await import('../out/main/indexer.js');
process.stdout.write('STARTING\n');
const result = buildIndex(payload.options);
process.stdout.write(`RESULT ${JSON.stringify(result)}\n`);
} else {
throw new Error(`Unknown concurrency child mode: ${mode}`);
}
+158
View File
@@ -0,0 +1,158 @@
// Real Electron/better-sqlite3 concurrency test (docs/adr/0006 Phase 2).
// Run: cd app && npx electron tests/electron-concurrency.mjs
//
// Exercises actual dual-connection contention against a WAL database using the
// Electron-ABI better-sqlite3 that the app uses in production.
import { app } from 'electron';
import { spawn } from 'node:child_process';
import { mkdirSync, writeFileSync, rmSync, mkdtempSync } from 'node:fs';
import { tmpdir } from 'node:os';
import { dirname, join } from 'node:path';
import { fileURLToPath } from 'node:url';
import { createInterface } from 'node:readline';
import { once } from 'node:events';
import { setTimeout as delay } from 'node:timers/promises';
import Database from 'better-sqlite3';
import { buildIndex } from '../out/main/indexer.js';
let failures = 0;
const childScript = join(dirname(fileURLToPath(import.meta.url)), 'electron-concurrency-child.mjs');
function assert(condition, msg) {
if (!condition) { console.error('FAIL:', msg); failures++; }
else console.log('PASS:', msg);
}
function spawnChild(mode, payload) {
return spawn(process.execPath, [childScript, mode, JSON.stringify(payload)], {
env: { ...process.env, ELECTRON_RUN_AS_NODE: '1' },
stdio: ['pipe', 'pipe', 'inherit'],
});
}
function lineReader(child) {
const lines = [];
const waiters = [];
createInterface({ input: child.stdout }).on('line', line => {
lines.push(line);
for (const waiter of [...waiters]) {
if (!line.startsWith(waiter.prefix)) continue;
waiters.splice(waiters.indexOf(waiter), 1);
waiter.resolve(line);
}
});
return {
waitFor(prefix) {
const existing = lines.find(line => line.startsWith(prefix));
if (existing) return Promise.resolve(existing);
return new Promise(resolve => waiters.push({ prefix, resolve }));
},
};
}
async function waitForSuccess(child) {
let code = child.exitCode;
if (code === null) [code] = await once(child, 'exit');
assert(code === 0, `child exited successfully, code=${code}`);
}
async function run() {
const home = mkdtempSync(join(tmpdir(), 'obelisk-electron-concurrency-'));
const dbPath = join(home, '.obelisk', 'obelisk.sqlite');
const projectsDir = join(home, '.claude', 'projects');
const projDir = join(projectsDir, '-proj');
mkdirSync(join(home, '.obelisk'), { recursive: true });
mkdirSync(projDir, { recursive: true });
function msg(uuid) {
return JSON.stringify({
uuid, type: 'user', timestamp: '2026-06-10T10:00:00Z', cwd: '/tmp',
message: { role: 'user', content: `concurrent ${uuid}` },
}) + '\n';
}
for (let i = 0; i < 20; i++) {
writeFileSync(join(projDir, `s${i}.jsonl`), msg(`m${i}`));
}
console.log('--- Test 1: buildIndex with real better-sqlite3 ---');
const result = buildIndex({
force: true,
claudeDir: join(home, '.claude'),
codexDir: join(home, '.codex'),
projectsDir,
dbPath,
DatabaseImpl: Database,
});
assert(result.files === 20, `indexed 20 files, got ${result.files}`);
assert(result.skipped === 0, `no files skipped, got ${result.skipped}`);
console.log('--- Test 2: concurrent reader during write ---');
const reader = new Database(dbPath, { readonly: true });
reader.pragma('journal_mode = WAL');
const readStmt = reader.prepare('SELECT COUNT(*) AS c FROM sessions');
const beforeCount = readStmt.get().c;
assert(beforeCount === 20, `reader sees 20 sessions, got ${beforeCount}`);
// Incremental build concurrent with open reader
const result2 = buildIndex({
force: false,
claudeDir: join(home, '.claude'),
codexDir: join(home, '.codex'),
projectsDir,
dbPath,
DatabaseImpl: Database,
});
assert(result2.skipped === 0, `concurrent build no skips, got ${result2.skipped}`);
const duringCount = readStmt.get().c;
assert(duringCount === 20, `reader snapshot stable, got ${duringCount}`);
reader.close();
console.log('--- Test 3: a real concurrent writer releases within the lease budget ---');
const lockPath = join(dirname(dbPath), 'writer.lock.sqlite');
const buildOptions = {
force: false,
claudeDir: join(home, '.claude'),
codexDir: join(home, '.codex'),
projectsDir,
dbPath,
writerLeaseWaitMs: 1500,
};
const holder = spawnChild('holder', { lockPath });
const holderLines = lineReader(holder);
await holderLines.waitFor('READY');
const contendedBuild = spawnChild('build', { options: buildOptions });
const buildLines = lineReader(contendedBuild);
await buildLines.waitFor('STARTING');
const startedAt = Date.now();
await delay(200);
holder.stdin.write('release\n');
const resultLine = await buildLines.waitFor('RESULT ');
const result3 = JSON.parse(resultLine.slice('RESULT '.length));
const waitedMs = Date.now() - startedAt;
assert(result3.deferred === false, `contended build completed, reason=${result3.reason}`);
assert(result3.skipped === 0, `contended build skipped no files, got ${result3.skipped}`);
assert(waitedMs >= 150, `build overlapped the held lease for ${waitedMs}ms`);
await Promise.all([waitForSuccess(holder), waitForSuccess(contendedBuild)]);
console.log('--- Test 4: persistent writer contention is bounded ---');
const persistentHolder = spawnChild('holder', { lockPath });
const persistentHolderLines = lineReader(persistentHolder);
await persistentHolderLines.waitFor('READY');
const boundedBuild = spawnChild('build', { options: { ...buildOptions, writerLeaseWaitMs: 200 } });
const boundedLines = lineReader(boundedBuild);
await boundedLines.waitFor('STARTING');
const boundedStartedAt = Date.now();
const boundedResultLine = await boundedLines.waitFor('RESULT ');
const boundedResult = JSON.parse(boundedResultLine.slice('RESULT '.length));
const boundedMs = Date.now() - boundedStartedAt;
assert(boundedResult.deferred === true, 'persistent contention returns deferred');
assert(boundedResult.reason === 'writer_busy', `persistent contention reason=${boundedResult.reason}`);
assert(boundedMs < 1000, `persistent contention returned within budget (${boundedMs}ms)`);
persistentHolder.stdin.write('release\n');
await Promise.all([waitForSuccess(persistentHolder), waitForSuccess(boundedBuild)]);
rmSync(home, { recursive: true, force: true });
console.log('---');
console.log(failures ? `${failures} TEST(S) FAILED` : 'ALL TESTS PASSED');
process.exitCode = failures ? 1 : 0;
}
app.whenReady().then(run).finally(() => app.quit());